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LSFM (Light Sheet Fluorescent Microscopy)

This is a list of publications on the theory, design and applications of light sheet microscopy and similar techniques. We try to keep it up-to-date, but please email Susi (spower@morgridge.org) if a paper is missing.

2010 SPIM Publications

Arrenberg, A. B., Stainier, D. Y. R., Baier, H., & Huisken, J. (2010). Optogenetic control of cardiac function. Science, 330(6006), 971–974. https://doi.org/10.1126/science.1195929


Bagnat, M., Navis, A., Herbstreith, S., Brand-Arzamendi, K., Curado, S., Gabriel, S., … Stainier, D. Y. R. (2010). Cse1l is a negative regulator of CFTR-dependent fluid secretion. Curr. Biol., 20(20), 1840–1845. https://doi.org/10.1016/j.cub.2010.09.012


Barman, I., Tan, K. M., & Singh, G. P. (2010). Optical sectioning using single-plane-illumination Raman imaging. J. Raman Spectrosc., 41(10), 1099–1101. https://doi.org/10.1002/jrs.2785


Engelbrecht, C. J., Voigt, F., & Helmchen, F. (2010). Miniaturized selective plane illumination microscopy for high-contrast in vivo fluorescence imaging. Opt. Lett., 35(9), 1413–1415. https://doi.org/10.1364/OL.35.001413


Fahrbach, F. O., & Rohrbach, A. (2010). A line scanned light-sheet microscope with phase shaped self-reconstructing beams. Opt. Express, 18(23), 24229–24244. https://doi.org/10.1364/OE.18.024229


Fahrbach, F. O., Simon, P., & Rohrbach, A. (2010). Microscopy with self-reconstructing beams. Nat. Photonics, 4(11), 780–785. https://doi.org/10.1038/nphoton.2010.204


Jährling, N., Becker, K., Schönbauer, C., Schnorrer, F., & Dodt, H.-U. (2010). Three-dimensional reconstruction and segmentation of intact Drosophila by ultramicroscopy. Front. Syst. Neurosci., 4, 1. https://doi.org/10.3389/neuro.06.001.2010


Kalchmair, S., Jährling, N., Becker, K., & Dodt, H.-U. (2010). Image contrast enhancement in confocal ultramicroscopy. Opt. Lett., 35(1), 79–81. https://doi.org/10.1364/OL.35.000079


Keller, P. J., Schmidt, A. D., Santella, A., Khairy, K., Bao, Z., Wittbrodt, J., & Stelzer, E. H. K. (2010). Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nat. Methods, 7(8), 637–642. https://doi.org/10.1038/nmeth.1476


Keller, P. J., & Stelzer, E. H. K. (2010). Digital scanned laser light sheet fluorescence microscopy. Cold Spring Harb. Protoc., 2010(5), db.top78. https://doi.org/10.1101/pdb.top78


Lei, M., & Zumbusch, A. (2010). Structured light sheet fluorescence microscopy based on four beam interference. Opt. Express, 18(18), 19232–19241. https://doi.org/10.1364/OE.18.019232


Leischner, U., Schierloh, A., Zieglgänsberger, W., & Dodt, H.-U. (2010). Formalin-induced fluorescence reveals cell shape and morphology in biological tissue samples. PLoS One, 5(4), e10391. https://doi.org/10.1371/journal.pone.0010391


Liu, J., Bressan, M., Hassel, D., Huisken, J., Staudt, D., Kikuchi, K., … Stainier, D. Y. R. (2010). A dual role for ErbB2 signaling in cardiac trabeculation. Development, 137(22), 3867–3875. https://doi.org/10.1242/dev.053736


Mertz, J., & Kim, J. (2010). Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection. J. Biomed. Opt., 15(1), 16027. https://doi.org/10.1117/1.3324890


Morozov, A. N., Turchin, I. V., Kamenskii, V. A., Fiks, I. I., Lazutkin, A. A., Bezryadkov, D. V., … Anokhin, K. V. (2010). Fibreoptic fluorescent microscopy in studying biological objects (Vol. 40). Retrieved from http://stacks.iop.org/1063-7818/40/i=9/a=A14?key=crossref.5a3a718582a1049ae0e9a96687e747e5


Palero, J., Santos, S. I. C. O., Artigas, D., & Loza-Alvarez, P. (2010). A simple scanless two-photon fluorescence microscope using selective plane illumination. Opt. Express, 18(8), 8491–8498. https://doi.org/10.1364/OE.18.008491


Preibisch, S., Saalfeld, S., Schindelin, J., & Tomancak, P. (2010). Software for bead-based registration of selective plane illumination microscopy data. Nat. Methods, 7(6), 418–419. https://doi.org/10.1038/nmeth0610-418


Reynaud, E. G., & Tomancak, P. (2010). Meeting report: first light sheet based fluorescence microscopy workshop. Biotechnol. J., 5(8), 798–804. https://doi.org/10.1002/biot.201000177


Ritter, J. G., Spille, J.-H., Kaminski, T., & Kubitscheck, U. (2010). A cylindrical zoom lens unit for adjustable optical sectioning in light sheet microscopy. Biomed. Opt. Express, 2(1), 185–193. https://doi.org/10.1364/BOE.2.000185


Ritter, J. G., Veith, R., Veenendaal, A., Siebrasse, J. P., & Kubitscheck, U. (2010). Light sheet microscopy for single molecule tracking in living tissue. PLoS One, 5(7), e11639. https://doi.org/10.1371/journal.pone.0011639


Saghafi, S., Becker, K., Jährling, N., Richter, M., Kramer, E. R., & Dodt, H.-U. (2010). Image enhancement in ultramicroscopy by improved laser light sheets. J. Biophotonics, 3(10–11), 686–695. https://doi.org/10.1002/jbio.201000047


Schacht, P., Johnson, S. B., & Santi, P. A. (2010). Implementation of a continuous scanning procedure and a line scan camera for thin-sheet laser imaging microscopy. Biomed. Opt. Express, 1(2), 598–609. https://doi.org/10.1364/BOE.1.000598/


Turaga, D., & Holy, T. E. (2010). Image-based calibration of a deformable mirror in wide-field microscopy. Appl. Opt., 49(11), 2030–2040. https://doi.org/10.1364/AO.49.002030


Wohland, T., Shi, X., Sankaran, J., & Stelzer, E. H. K. (2010). Single plane illumination fluorescence correlation spectroscopy (SPIM-FCS) probes inhomogeneous three-dimensional environments. Opt. Express, 18(10), 10627–10641. https://doi.org/10.1364/OE.18.010627