Genomics : Nucleic Acids
Nucleic Acids
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BMRB: Biological Magnetic Resonance Data BankRepository for data from NMR Spectroscopy on proteins, peptides, nucleic acids, and other biomolecules
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Database of Genomic Structural Variation (dbVar)NCBI's database of genomic structural variation – it contains insertions, deletions, duplications, inversions, multinucleotide substitutions, mobile element insertions, translocations, and complex chromosomal rearrangements.
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Database of Short Genetic Variations (dbSNP)Includes single nucelotide variations, microsatellites, and small-scale insertions and deletions.
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DNA Databank of Japan (DDBJ)Data bank of sequence data organized by Japan's National Institute of Genetics.
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European Nucleotide Archive (ENA)A comprehensive record of the world's nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation.
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GenBankNIH genetic sequence database of all publicly available DNA sequences
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NCBI DatabasesIntegrated search and retreival system including PubMed, nucleotide and protein sequences, protein and chemical structures, genomes, taxonomy, and others
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Protein Data Bank (PDB)Experimentally-determined structures of proteins, nucleic acids, and complex assemblies
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Sequence Read ArchiveStores raw sequencing data plus alignment information in the form of read placements on a reference sequence.
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BLASTBLAST finds regions of similarity between biological sequences. The program compares nucleotide sequences to sequence databases and calculates the statistical significance.
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Codon Usage DatabaseFrom NCBI-GenBank Flat File Release 160.0 [June 15 2007]
Please recommend additional databases for inclusion in this guide.
Steenbock Library
Barbara Sisolak
Contact:
Steenbock Library, Room 119
550 Babcock Drive
Madison, WI 53706
608/263-2385
550 Babcock Drive
Madison, WI 53706
608/263-2385